
These Vanilla Bean Crème Brûlée Cheesecake Cupcakes blend the rich custard crackle of classic crème brûlée with the lush creaminess of cheesecake in perfectly portioned cupcake form. Each bite brings you a buttery graham cracker crust, silky vanilla bean filling, and that irresistible caramelized sugar top. I first served these for a family celebration thinking nobody would believe I made them myself. The best part is you can make them in your own kitchen easily, no fancy skills required.
My favorite part is how these always wow guests. That first crack of the caramel top never fails to bring smiles and, honestly, I love how much they look like bakery treats without all the fuss.
Ingredients
- Graham cracker crumbs: give the crust a buttery warmth and hold everything together opt for freshly crushed for extra flavor
- Unsalted butter: adds richness to the base use high quality for the best taste
- Granulated sugar: sweetens both the crust and cheesecake layer choose ultra fine sugar for easier blending and smooth caramelization
- Cream cheese: creates the creamy decadent filling always use full-fat room temperature for best texture
- Eggs: bind the filling and add silkiness fresh large eggs work best
- Vanilla extract: provides background vanilla warmth pure extract gives a fuller flavor
- Vanilla bean paste or fresh vanilla bean seeds: offer aromatic vanilla intensity check for thick paste packed with real seeds
- All-purpose flour: helps stabilize the cheesecake a little goes a long way
- Salt: balances the sweetness and enriches the vanilla notes fine sea salt dissolves best
- Sour cream: lightens the texture and adds a hint of tang always full fat for creamy results
- More granulated sugar for caramelizing: makes that classic crackly topping superfine sugar melts most evenly under heat
Step-by-Step Instructions
- Preheat the Oven
- Set the oven to 325 degrees Fahrenheit and line a 12-cup muffin pan with sturdy cupcake liners. This ensures easy removal and even baking for every cupcake.
- Make the Crust
- Combine the graham cracker crumbs with melted unsalted butter and sugar in a bowl. Mix thoroughly using a fork until every crumb is moistened and the mixture looks like wet sand.
- Fill and Bake the Crust
- Add about one tablespoon of the crust mixture into each liner. Press it firmly down with a spoon so you get a packed base. Bake for five to seven minutes until lightly golden and set them aside to cool as you prepare the filling.
- Prepare the Cheesecake Filling
- Beat softened cream cheese until smooth and creamy in a large bowl. Gradually add sugar blending until incorporated with no lumps left. Add in eggs one at a time mixing just until combined after each addition. Stir in vanilla extract and vanilla bean paste then sprinkle in flour and salt. Fold in sour cream gently for a perfectly silky base.
- Fill and Bake
- Spoon the filling evenly into the liners over the cooled crusts filling each about three quarters full. Place the pan in the oven and bake for twenty to twenty five minutes. The centers should still jiggle gently but not be liquid. Overbaking leads to dry cupcakes so check a few minutes early.
- Cool Gently
- Turn off the oven and crack the door letting the cupcakes rest for ten minutes. Then transfer them to a wire rack for at least another ten minutes of cooling before chilling in the refrigerator for at least one hour.
- Caramelize the Sugar
- Once fully chilled and just before serving sprinkle a thin even layer of granulated sugar over each cupcake. Use a small kitchen torch to melt and caramelize the sugar until golden and bubbling. Let the tops sit for a minute or two to fully harden into that signature crisp shell.

My absolute favorite part of this recipe is working with real vanilla bean paste It perfumes the whole kitchen and those little black flecks make the cupcakes look extra special. One memorable moment was sharing these cupcakes at our annual holiday party and hearing everyone gasp at the first crack of the sugar top.
Storage Tips
Store cooled and fully set cheesecake cupcakes uncaramelized in a lidded container in the refrigerator for up to three days. Add the sugar topping and caramelize just before eating for maximum crackle. For longer storage freeze plain cupcakes tightly wrapped without the topping and thaw overnight in the fridge.
Ingredient Substitutions
If you do not have graham crackers try vanilla wafer cookies or digestive biscuits for the crust. For a nutty twist blend in some finely ground pecans with your crumbs. Substitute Greek yogurt for sour cream if needed and if vanilla bean paste is unavailable just use all extract or scrape seeds from a whole vanilla bean.
Serving Suggestions
Bring cupcakes to room temperature for fifteen to twenty minutes before serving if you want extra creaminess at the center. Fresh raspberries blueberries or a swirl of berry compote are natural flavor companions. For a fancier look dust lightly with powdered sugar or add fresh mint leaves as garnish.

A Little History
Crème brûlée has French origins as a classic custard dessert with a caramelized sugar top while cheesecake hails from ancient Greece. This recipe blends the two traditions for a dessert that feels both modern and deeply rooted in dessert history. Mini versions make it easy to bring a touch of European elegance to weeknight or party tables alike.
Recipe FAQs
- → How can I achieve a smooth cheesecake filling?
Ensure all ingredients, especially cream cheese and eggs, are at room temperature before mixing. Beat gently to avoid overmixing and to keep the texture creamy.
- → What is the best way to caramelize the sugar topping?
Use a kitchen torch to evenly melt and brown the sugar in a circular motion, avoiding burning and achieving a crisp, golden crust.
- → Can I make these cupcakes gluten-free?
Yes, by substituting graham cracker crumbs with a gluten-free alternative, you can maintain the crust texture without gluten.
- → How long should I chill the cupcakes before serving?
Refrigerate for at least two hours to allow the filling to set firmly and enhance the flavors.
- → What if I don’t have a kitchen torch for caramelizing?
You can place the cupcakes under a broiler for a few seconds, watching closely to prevent the sugar from burning.